PoplarV1, Main, Exploration, bibRecord, 003856

Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula.

Identifieur interne : 003856 ( Main/Exploration ); précédent : 003855; suivant : 003857

Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula.

Auteurs : P R K. Ingvarsson [Suède]

Source :

Genetics [ 0016-6731 ] ; 2008.

RBID : pubmed:18716330

Descripteurs français

KwdFr :
- Biologie informatique (MeSH), Délétion de gène (MeSH), Déséquilibre de liaison (MeSH), Fréquence d'allèle (MeSH), Gènes de plante (MeSH), Génétique des populations (MeSH), Logiciel (MeSH), Modèles génétiques (MeSH), Modèles statistiques (MeSH), Mutation (MeSH), Polymorphisme génétique (MeSH), Populus (génétique), Protéines végétales (métabolisme), Théorème de Bayes (MeSH).
MESH :
- génétique : Populus.
- métabolisme : Protéines végétales.
- Biologie informatique, Délétion de gène, Déséquilibre de liaison, Fréquence d'allèle, Gènes de plante, Génétique des populations, Logiciel, Modèles génétiques, Modèles statistiques, Mutation, Polymorphisme génétique, Théorème de Bayes.

English descriptors

KwdEn :
- Bayes Theorem (MeSH), Computational Biology (MeSH), Gene Deletion (MeSH), Gene Frequency (MeSH), Genes, Plant (MeSH), Genetics, Population (MeSH), Linkage Disequilibrium (MeSH), Models, Genetic (MeSH), Models, Statistical (MeSH), Mutation (MeSH), Plant Proteins (metabolism), Polymorphism, Genetic (MeSH), Populus (genetics), Software (MeSH).
MESH :
- chemical , metabolism : Plant Proteins.
- genetics : Populus.
- Bayes Theorem, Computational Biology, Gene Deletion, Gene Frequency, Genes, Plant, Genetics, Population, Linkage Disequilibrium, Models, Genetic, Models, Statistical, Mutation, Polymorphism, Genetic, Software.

Abstract

I have studied nucleotide polymorphism and linkage disequilibrium using multilocus data from 77 fragments, with an average length of fragments of 550 bp, in the deciduous tree Populus tremula (Salicaceae). The frequency spectrum across loci showed a modest excess of mutations segregating at low frequency and a marked excess of high-frequency derived mutations at silent sites, relative to neutral expectations. These excesses were also seen at replacement sites, but were not so pronounced for high-frequency derived mutations. There was a marked excess of low-frequency mutations at replacement sites, likely indicating deleterious amino acid-changing mutations that segregate at low frequencies in P. tremula. I used approximate Bayesian computation (ABC) to evaluate a number of different demographic scenarios and to estimate parameters for the best-fitting model. The data were found to be consistent with a historical reduction in the effective population size of P. tremula through a bottleneck. The timing inferred for this bottleneck is largely consistent with geological data and with data from several other long-lived plant species. The results show that P. tremula harbors substantial levels of nucleotide polymorphism with the posterior mode of the scaled mutation rate, theta = 0.0177 across loci. The ABC analyses also provided an estimate of the scaled recombination rate that indicates that recombination rates in P. tremula are likely to be 2-10 times higher than the mutation rate. This study reinforces the notion that linkage disequilibrium is low and decays to negligible levels within a few hundred base pairs in P. tremula.

DOI: 10.1534/genetics.108.090431
PubMed: 18716330
PubMed Central: PMC2535685

Affiliations:

Suède

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Le document en format XML

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<front><div type="abstract" xml:lang="en">I have studied nucleotide polymorphism and linkage disequilibrium using multilocus data from 77 fragments, with an average length of fragments of 550 bp, in the deciduous tree Populus tremula (Salicaceae). The frequency spectrum across loci showed a modest excess of mutations segregating at low frequency and a marked excess of high-frequency derived mutations at silent sites, relative to neutral expectations. These excesses were also seen at replacement sites, but were not so pronounced for high-frequency derived mutations. There was a marked excess of low-frequency mutations at replacement sites, likely indicating deleterious amino acid-changing mutations that segregate at low frequencies in P. tremula. I used approximate Bayesian computation (ABC) to evaluate a number of different demographic scenarios and to estimate parameters for the best-fitting model. The data were found to be consistent with a historical reduction in the effective population size of P. tremula through a bottleneck. The timing inferred for this bottleneck is largely consistent with geological data and with data from several other long-lived plant species. The results show that P. tremula harbors substantial levels of nucleotide polymorphism with the posterior mode of the scaled mutation rate, theta = 0.0177 across loci. The ABC analyses also provided an estimate of the scaled recombination rate that indicates that recombination rates in P. tremula are likely to be 2-10 times higher than the mutation rate. This study reinforces the notion that linkage disequilibrium is low and decays to negligible levels within a few hundred base pairs in P. tremula.</div>
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<ReferenceList><Reference><Citation>Evolution. 2007 Dec;61(12):2849-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17908247</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Evolution. 2008 Feb;62(2):255-65</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18302709</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 1997 Jul;146(3):1197-206</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9215920</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genet Res. 1997 Oct;70(2):155-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9449192</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 1998 Mar;8(3):175-85</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9521921</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 1998 Mar;8(3):195-202</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9521923</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 1998 Apr 14;95(8):4441-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9539756</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Theor Popul Biol. 1998 Apr;53(2):166-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9615475</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2005 Feb;169(2):945-53</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15489521</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Ecol. 2005 Apr;14(4):1045-57</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15773935</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2005 Mar;169(3):1601-15</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15654111</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Methods Mol Biol. 2000;132:365-86</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10547847</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 1999 Dec;16(12):1791-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10605120</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2000 Jun;155(2):945-59</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10835412</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2000 Jul;155(3):1405-13</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10880498</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2000 Oct;17(10):1483-98</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11018155</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11479-84</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11562485</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Heredity (Edinb). 2001 Jun;86(Pt 6):641-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11595044</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2001 Dec;159(4):1805-17</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11779816</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Genet. 2002 Feb;30(2):190-3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11780140</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2002 Feb;18(2):337-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11847089</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2002 Mar;160(3):1179-89</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11901132</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2002 Apr;12(4):656-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11932250</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2002 Dec;162(4):2025-35</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12524368</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2003 Jun 6;300(5625):1563-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12791991</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Plant Biol. 2008 Apr;11(2):149-55</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18262830</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 1997 Jul 15;25(14):2745-51</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9207020</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2003 Nov 22;19(17):2325-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14630667</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2003 Nov;165(3):1619-22</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14668409</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2004 Feb;14(2):273-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14762063</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2004 Jan;166(1):373-88</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15020431</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Philos Trans R Soc Lond B Biol Sci. 2004 Feb 29;359(1442):183-95; discussion 195</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15101575</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2004 Jul;21(7):1214-25</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15014173</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Trends Plant Sci. 2004 Jul;9(7):325-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15231277</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13951-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15353603</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15255-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15477602</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Theor Popul Biol. 1975 Apr;7(2):256-76</Citation>
<ArticleIdList><ArticleId IdType="pubmed">1145509</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 1983 Oct;105(2):437-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">6628982</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 1989 Nov;123(3):585-95</Citation>
<ArticleIdList><ArticleId IdType="pubmed">2513255</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 1989 Dec;123(4):887-99</Citation>
<ArticleIdList><ArticleId IdType="pubmed">2612899</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 1994 Nov 11;22(22):4673-80</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7984417</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9440-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12883005</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2003 Aug;164(4):1547-59</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12930759</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2005 May 27;308(5726):1310-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15919994</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2005 Jun;15(6):790-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15930491</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Biol. 2005 Jul;3(7):e196</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15907155</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2005 Sep;22(9):1802-12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15917499</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2005 Oct;22(10):2119-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15987874</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2005 Nov;171(3):1247-56</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16157678</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2005 Dec;171(4):2029-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16157674</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2006 Mar;172(3):1607-19</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16299396</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2006 Mar;172(3):1915-26</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16387885</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2006 May;173(1):321-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16322511</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2006 Jun;173(2):953-64</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16547110</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Mol Evol. 2006 Jul;63(1):108-19</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16755353</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2006 Nov;174(3):1431-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16951063</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2006 Dec;174(4):2095-105</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17057229</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2007 Mar;24(3):836-44</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17204548</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2007 Mar;24(3):875-88</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17218640</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Plant Biol. 2007 Apr;10(2):162-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17292660</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Biol. 2007;8(2):R21</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17309804</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Heredity (Edinb). 2007 Jun;98(6):340-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17473869</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2007 Sep;177(1):457-68</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17660563</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Genet. 2007 Sep;3(9):1745-56</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17907810</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genetics. 2007 Nov;177(3):1713-24</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18039881</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula.

Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula.

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